PseudoMarkerFinder: Pseudo MarkerFinder

Description Usage Arguments Value

View source: R/PseudoMarkerFinder.R

Description

This function uses ANOVA to look for unique gene expression in each possible doublet cluster.

Usage

1
PseudoMarkerFinder(groups, redu_data2, full_data2, min_uniq = 4, log_file_name)

Arguments

groups

Processed groups file from CleanUpInput.

redu_data2

Processed data from CleanUpInput (or RemoveCellCycle) path, automatically written.

full_data2

cleaned full expression matrix from CleanUpInput.

min_uniq

minimum number of unique genes required for a cluster to be rescued

log_file_name

used for saving run notes to log file

Value

new_table - non-doublet clusters, as determined by the "Remove" and "Rescue" steps.


lyc-1995/DoubletDeconSeurat documentation built on March 8, 2020, 5:47 a.m.