Recluster: Recluster

In lyc-1995/DoubletDeconSeurat: Seurat wrappers with DoubletDecon

Description

This function reclusters doublets and non doublets seperately based on deconvolution analysis and returns a new expression file, groups file, and DeconFreq table for downstream analyses.

Usage

Recluster(isADoublet, data, groups, log_file_name)

Arguments

isADoublet	isADoublet data.frame from IsDoublet.
data	Processed data from CleanUpInput (or RemoveCellCycle).
groups	Processed groups file from CleanUpInput.
log_file_name	used for saving run notes to log file

Value

newData2 - processed expression and groups file, reordered, with correct new cluster numbers.

decon - DeconCalledFreq table with all doublets 100 percent doublet and all non doublets at 0 percent doublet frequency.

lyc-1995/DoubletDeconSeurat documentation built on March 8, 2020, 5:47 a.m.