IsDoublet: Is A Doublet

In lyc-1995/DoubletDeconSeurat: Seurat wrappers with DoubletDecon

Description

This function uses deconvolution analysis (DeconRNASeq) to evaluate each cell for equal contribution from blacklisted clusters.

Usage

IsDoublet(data, newMedoids, groups, synthProfiles, log_file_name)

Arguments

data	Processed data from CleanUpInput (or RemoveCellCycle).
newMedoids	New combined medoids from BlacklistGroups.
groups	Processed groups file from CleanUpInput.
synthProfiles	Average profiles of synthetic doublets from SyntheticDoublets.
log_file_name	used for saving run notes to log file

Value

isADoublet - data.frame with each cell as a row and whether it is called a doublet by deconvolution analysis.

resultsreadable - data.frame with results of deconvolution analysis (cell by cluster) in percentages.

lyc-1995/DoubletDeconSeurat documentation built on March 8, 2020, 5:47 a.m.