Man pages for lycium0605/rLCLAE
Implement Low Coverage Local Ancestry Estimation in R
| anccall | anccall |
| anccall_c | anccall_c: Generating ancestry call along the chromosome |
| anccall_check_int | anccall_check_int |
| anccall_check_ori | anccall_check_ori |
| anccall_c_int | anccall_c_int: Generating ancestry call along the chromosome |
| anccall_c_nozero | anccall_c_nozero: Generating ancestry call along the... |
| anccall_c_nozero_int | anccall_c_nozero_int: Generating ancestry call along the... |
| anccall_c_ori | anccall_c_ori: Generating ancestry call along the chromosome |
| anccall_c_test | anccall_c: Generating ancestry call along the chromosome |
| anccall_hap_c | anccall_c: Generating ancestry call along the chromosome |
| anccall_nozero | anccall_nozero |
| ancfreq | ancfreq |
| ancfreq_c | ancfreq_c |
| ancfreq_merge | ancfreq_merge: Merging haploid & dipoid dataset |
| ancgen | ancgen |
| anclik | anclik |
| anclik_c | anclik_c: Calculating the ancestral likelihood of a test... |
| anctract | anctract |
| anctract_c | anctract_c: Generating ancestry tract from call. |
| datacheck | datacheck A function to check if the file contains certain... |
| filt1_dip | filt1_dip: transforming the phred score to relative genotype... |
| filt1_hap | filt1_hap: transforming the phred score to relative genotype... |
| freqsum | freqsum |
| genolik | Calculating the relative genotype likelihood from a vcf file. |
| get_chrlist | get_chrlist |
| get_genolik | get_genolik: vcf to genolik |
| get_genolik_c | get_genolik_c: Get genolik directly from vcf |
| get_genolik_extended_c | get_genolik_extended_c: Get genolik directly from vcf |
| getmode | getmode |
| gettract | gettract |
| glpow | GL=10^(-pl) |
| inputcheck | inputcheck |
| mergefreq | mergefreq |
| preprocess | preprocess |
| rLCLAE | rLCLAE |
