ancfreq_c: ancfreq_c

In lycium0605/rLCLAE: Implement Low Coverage Local Ancestry Estimation in R

ancfreq_c

Description

Calculating the allele frequency in two different ancestral population

Usage

ancfreq_c(n, type, pop1, n_pop1, n_pop2, pop2, input, output)

Arguments

n	an integer, the number of individuals contain in the input
type	1 or 2, specifying diploid/haploid data.
pop1	a numeric vector of index for reference population 1, sep = ' '
n_pop1	number of individual for ref pop 1
n_pop2	number of individual for ref pop 2
pop2	a numeric vector of index for reference population 2, sep = ' '
input	the dir of the input genolik file
output	the dir of the output ancfreq file

lycium0605/rLCLAE documentation built on Aug. 28, 2024, 11:35 p.m.