anclik: anclik
In lycium0605/rLCLAE: Implement Low Coverage Local Ancestry Estimation in R
anclik R Documentation
anclik
Description
anclik
Usage
anclik(genodir, ancfreqdir, outputdir, type = "dip", test = "all")
Arguments
genodir
genotype likelihood file
ancfreqdir
ancestral allele frequency file
outputdir
ancestral state estimation
type
'hap' or 'dip'
test
can be 'all' or a numeric vector containing the numeric index (e.g. c(1,2,3) will represent the first, second and third individuals in the vcf file) of individuals to be estimated. A suffix "_n" will be added to each output file.
Value
nothing
lycium0605/rLCLAE documentation built on Aug. 28, 2024, 11:35 p.m.
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| anclik | R Documentation |
anclik
Description
anclik
Usage
anclik(genodir, ancfreqdir, outputdir, type = "dip", test = "all")
Arguments
genodir |
genotype likelihood file |
ancfreqdir |
ancestral allele frequency file |
outputdir |
ancestral state estimation |
type |
'hap' or 'dip' |
test |
can be 'all' or a numeric vector containing the numeric index (e.g. c(1,2,3) will represent the first, second and third individuals in the vcf file) of individuals to be estimated. A suffix "_n" will be added to each output file. |
Value
nothing
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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