anccall_check_ori: anccall_check_ori

In lycium0605/rLCLAE: Implement Low Coverage Local Ancestry Estimation in R

anccall_check_ori

Description

anccall_check_ori

Usage

anccall_check_ori(
  inputdir,
  outputdir,
  chrom_name,
  indiv_name,
  mode_min = 0.5,
  n_min = 0,
  delta = 0.2,
  window_size = 50000
)

Arguments

inputdir	The file to the ancestral likelihood file
outputdir	The file to store the ancestry call
chrom_name	The name of the chromosome
indiv_name	The name of the individual
mode_min	The minimum percentage for the mode to make a call, default set to 0.5
n_min	the minimum number of SNPs within the window to make a call, default set to zero
delta	The cutoff for ancestral allele frequency difference
window_size	The size of the sliding window

Value

nothing

lycium0605/rLCLAE documentation built on Aug. 28, 2024, 11:35 p.m.