genolik: Calculating the relative genotype likelihood from a vcf file.
In lycium0605/rLCLAE: Implement Low Coverage Local Ancestry Estimation in R
genolik R Documentation
Calculating the relative genotype likelihood from a vcf file.
Description
Calculating the relative genotype likelihood from a vcf file.
Usage
genolik(inputdir, outputdir, type = "dip")
Arguments
inputdir
The input directory of the cleaned vcf file.
outputdir
The output directory of the genolik file.
type
'hap' for haploid (i.e. male-X) data or 'dip' for diploid (Autosome), 'dip' as default
Value
Output a file in which each line represents a snp. The line looks like chr, pos, -1. -1. -1. (missing data) or gl1, gl2, gl3 transformed from the phred score.
lycium0605/rLCLAE documentation built on Aug. 28, 2024, 11:35 p.m.
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| genolik | R Documentation |
Calculating the relative genotype likelihood from a vcf file.
Description
Calculating the relative genotype likelihood from a vcf file.
Usage
genolik(inputdir, outputdir, type = "dip")
Arguments
inputdir |
The input directory of the cleaned vcf file. |
outputdir |
The output directory of the genolik file. |
type |
'hap' for haploid (i.e. male-X) data or 'dip' for diploid (Autosome), 'dip' as default |
Value
Output a file in which each line represents a snp. The line looks like chr, pos, -1. -1. -1. (missing data) or gl1, gl2, gl3 transformed from the phred score.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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