Files in mac-theobio/effects

isolated confidence intervals and bias-corrected predictor effects

R/effectsfuns.R R/implemented.R R/methodfuns.R R/pkgsExport.R R/plotsfuns.R R/utilities.R R/vareffects_pkg.R README.md TODOs.md aprroximation_bias_correction.rmd bad_example.R bias_correction.rmd bias_correction_methods.rmd binom_correlated.R binom_correlated_model.R binom_correlated_preds.R binom_multiple_outcomes.R binom_multiple_outcomes_binned.R binom_multiple_outcomes_model.R binom_multiple_outcomes_preds.R binom_multiple_outcomes_preds_plots.R brms_example_model.R brms_example_preds.R categorical_predictors.R center.R compare_emmeans_varpred.rmd cpred_baseR.R cubic_predictors.R cubic_predictors_model.R cubic_predictors_preds.R cubic_predictors_preds_adjust.R delta.R dev/binom.R dev/bs.R dev/demonstrate.R dev/fit.R dev/mediate.R dev/outputs/varEf.Rout.pdf dev/spline.R dev/varEf.R effects_writeup.R git_push/effects_writeup.pdf glm_one_predictor.R glm_one_predictor_model.R glm_one_predictor_preds.R glme_random_intercept.R glme_random_intercept_model.R glme_random_intercept_preds.R glossary.md inter_mod_lm.R inter_predict.R justify.R justify_model.R justify_preds.R lme_random_intercept.R logist_normal_bias.rmd man/as.data.frame.varpred.Rd man/combinevarpred.Rd man/data.frame.varpred.Rd man/getmeans.Rd man/getmeans.varpred.Rd man/pkgsExport.Rd man/plot.vareffects.Rd man/print.varpred.Rd man/recoverdata.Rd man/vareffects.Rd man/varefftheme.Rd man/varpred.Rd man/zero_vcov.Rd manuscript/alcohol_data.R manuscript/alcohol_plots.R manuscript/algebra.Rmd manuscript/anchor20.R manuscript/anchorRange.R manuscript/anchorplot.R manuscript/base.R manuscript/bi.R manuscript/comparemm.R manuscript/cubic_model.R manuscript/cubic_predictors.R manuscript/cubic_predictors_model.R manuscript/cubic_predictors_preds.R manuscript/cubic_preds.R manuscript/cubic_sim.R manuscript/cubic_varpred_margins_pred.R manuscript/defAnchor.R manuscript/eco_data.R manuscript/eduFull.R manuscript/eduPlot.R manuscript/eduQuad.R manuscript/eduUni.R manuscript/eduzPlot.R manuscript/effects.iv.pkgcompare.R manuscript/effects.params.pkgcompare.R manuscript/emmeans.iv.pkgcompare.R manuscript/fit.pkgcompare.R manuscript/fullN.R manuscript/glm_calcs.R manuscript/glm_talk.R manuscript/glm_two_predictor.R manuscript/glm_two_predictor_model.R manuscript/glm_two_predictor_preds.R manuscript/glm_two_predictor_preds_effects.R manuscript/hhgroup.R manuscript/jd_notes.Rmd manuscript/jonathan.R manuscript/justify.R manuscript/justify_anchors.R manuscript/justify_anchors_all.R manuscript/justify_model.R manuscript/justify_preds.R manuscript/mcomp.R manuscript/mediate.R manuscript/mediate_model.R manuscript/mediate_preds.R manuscript/nitroPlot.R manuscript/notes.md manuscript/observed.pkgcompare.R manuscript/outputs/vareffects_plosone.pdf manuscript/preds.params.pkgcompare.R manuscript/preds.pkgcompare.R manuscript/quadN.R manuscript/quantity_of_interest.R manuscript/sim.R manuscript/sim.data.pkgcompare.R manuscript/sim.params.pkgcompare.R manuscript/splash.R manuscript/truepredfun.R manuscript/uni.R manuscript/uniN.R manuscript/variable_predictions_funs.R manuscript/varpred.mc.pkgcompare.R manuscript/workflow_example.R mediate.R mediate_bin_bias.R mediate_bin_preds.R mediate_bin_preds_adjust.R mediate_model.R mediate_preds.R mod_lm.R multiple_outcomes.R multiple_outcomes_model.R multiple_outcomes_preds.R nonlin_bias.pdf notes.md outputs/aprroximation_bias_correction.pdf outputs/bias_correction.pdf outputs/bias_correction_methods.pdf outputs/binom_correlated_preds.Rout.pdf outputs/binom_multiple_outcomes_preds_plots.Rout.pdf outputs/compare_emmeans_varpred.pdf outputs/glme_random_intercept_preds.Rout.pdf outputs/mediate_bin_preds.Rout.pdf outputs/mediate_bin_preds_adjust.Rout.pdf outputs/mediate_preds.Rout.pdf outputs/predict_plots.Rout.pdf outputs/second_order_correction.pdf outputs/skinny_effects_plot.Rout.pdf outputs/variable_predictions.pdf outputs/variable_predictions.tex.pdf paper/altcheck.R paper/anchor20.R paper/bc.R paper/centers.R paper/check.R paper/check_data.R paper/check_defRef.R paper/check_obsRef.R paper/data.R paper/data.md paper/defAnchor.R paper/defRef.R paper/eco.R paper/eco_data.R paper/explore.R paper/fake.md paper/focal_check.rmd paper/glmPlot.md paper/glmfit.md paper/gvp.md paper/high.R paper/inter.R paper/interPlot.R paper/interglm.R paper/jd.R paper/meanAnchor.R paper/mfit.md paper/monster.R paper/multi.R paper/multiPK.R paper/multiglm.R paper/nitro.R paper/notes.md paper/obsRef.R paper/observed_approach.R paper/outputs/check_defRef.Rout.pdf paper/outputs/check_obsRef.Rout.pdf paper/outputs/eco.inter.defAnchor.ncomp.plot.Rout.pdf paper/outputs/eco.multiPK.defAnchor.ncomp.plot.Rout.pdf paper/outputs/high.multiglm.defRef.rnitro.glmPlot.Rout.pdf paper/outputs/high.multiglm.obsRef.rnitro.glmPlot.Rout.pdf paper/params.md paper/pkgs.R paper/plot.md paper/predict.R paper/quadComp.R paper/quadN.R paper/realObsRefTest.R paper/refComp.R paper/rnitro.R paper/robust.R paper/simple_example.R paper/smoothfuns.R paper/splash.R paper/splashCheck.R paper/straight.R paper/todo.md paper/uniMulti.R paper/uniN.R paper/uniglmN.R paper/vp.md paper/vv.R paper/weird.R pred_data.R predict_baseR.R predict_emmeans.R predict_jdeffect.R predict_plots.R prediction.R rstanarm_example.R rstanarm_example_model.R rstanarm_example_preds.R scales.R short_lab_report.rmd sims_data.R skinny_effects_plot.R structure.md taylor.R understanding_mm.rmd understanding_mm_special.rmd variable_predictions_funs.R variable_predictions_objs.R