dumpSNPPIT: Export snppit file
In mackerman44/idfgen: Import, Manipulate, and Export Genotype Data

Description Usage Arguments Author(s)

View source: R/dumpSNPPIT.r

dumpSNPPIT() exports a file in SNPPIT format

dumpSNPPIT(baselinePops, mixturePops, markers, filename, errorFile = NULL,
  errorDefaultValue = NULL, POPCOLUMN_SEX = NULL,
  POPCOLUMN_REPRO_YEARS = NULL, POPCOLUMN_SPAWN_GROUP = NULL,
  OFFSPRINGCOLUMN_BORN_YEAR = NULL, OFFSRPINGCOLUMN_SAMPLE_YEAR = NULL,
  OFFSPRINGCOLUMN_AGE_AT_SAMPLING = NULL)

`baselinePops`	the list of populations to be used as the parental baseline
`mixturePops`	the populations to be included as potential offspring
`markers`	the list of markers to be used in the snppit file
`filename`	what would you like to name the exported snppit file?
`errorFile`	if you have a .txt file containing the genotype error rates for each of the markers to be used in the snppit file, what is the name of the file? The .txt should contain 2 columns: 1) the name of each markers and 2) the error rate to be used
`errorDefaultValue`	if you don't have error rates for each of your markers, what would you like snppit to use as the default error rate
`POPCOLUMN_SEX`	If you would like to include sex information for the parents, which column in your input file contains the sex data?
`POPCOLUMN_REPRO_YEARS`	If you would like to include the year that the parents reproduced, which column in your input file contains the reporductive years?
`POPCOLUMN_SPAWN_GROUP`	If you would like to include spawn groups for the parents, which column in your input file contains the spawn groups?
`OFFSPRINGCOLUMN_BORN_YEAR`	If you would like to include the year born for offspring, which column contains that information?
`OFFSRPINGCOLUMN_SAMPLE_YEAR`	If you would like to include sampling year for offspring, which column in your input file contains that information?
`OFFSPRINGCOLUMN_AGE_AT_SAMPLING`	If you would like to include the age at sampling for offspring, which column in your input file contains that information?