dumpColony: Export COLONY file
In mackerman44/idfgen: Import, Manipulate, and Export Genotype Data

Description Usage Arguments Author(s)

View source: R/dumpColony.r

dumpColony() exports a file in Colony format

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dumpColony(x, markers = NULL, filename, errorFile = NULL,
  errorDefaultValues = c(0, 0), replaceBP = TRUE, basePairs = c("A", "C",
  "G", "T", "-"), replacements = c("1", "2", "3", "4", "5"))

`x`	the list of populations to be included in Colony file
`markers`	the markers to be included in Colony file
`filename`	what would you like to name the exported COLONY file?
`errorFile`	what would you like to name the marker error rate file for COLONY?
`errorDefaultValues`	what would you like your defaule genotype error rate to be for COLONY?
`replaceBP`	would you like to replace the allele names with something else. By default, `dumpColony()` replaces c("A","C","G","T","-") with c("1","2","3","4","5"). This can be set to "FALSE" to keep data in the original imported format. Alternatively, the `basePairs` and `replacements` arguments can be modified to accommodate any desired import or export format.
`basePairs`	If `replaceBP = TRUE`, the nomenclature used for the imported genotype data
`replacements`	If `replaceBP = TRUE`, what would you like to replace the alleles with?