dumpMixture: Export GSI mixture file
In mackerman44/idfgen: Import, Manipulate, and Export Genotype Data

Description Usage Arguments Author(s)

View source: R/dumpMixture.r

dumpMixture() exports a gsi mixture file in BAYES, SPAM, or gsi_sim format

dumpMixture(x, markers, fileType, filename, individuals = NULL,
  findMarkers = NULL, replaceWith = NULL, removePrefix = NULL,
  replaceBP = TRUE, basePairs = c("A", "C", "G", "T", "-"),
  replacements = c("1", "2", "3", "4", "5"))

`x`	the 'population' to be included in the gsi mixture file
`markers`	the markers to be included in gsi mixture file. NOTE: should be same markers set that was used for the `dumpBaselin()` function
`fileType`	the format of the exported gsi mixture file. Can be set to "SPAM", "BAYES", or "gsi_sim"
`filename`	what would you like to name the exported gsi mixture file
`individuals`	keep as default `NULL`
`findMarkers`	i don't remember what this does, just leave as the default `NULL`
`replaceWith`	something related to `findMarkers`. Also leave as the default `NULL`
`removePrefix`	this can be used to trim the marker names for "SPAM"
`replaceBP`	would you like to replace the allele names with something else. By default, `dumpMixture()` replaces c("A","C","G","T","-") with c("1","2","3","4","5"). This can be set to "FALSE" to keep data in the original imported format. Alternatively, the `basePairs` and `replacements` arguments can be modified to accommodate any desired import or export format.
`basePairs`	If `replaceBP = TRUE`, the nomenclature used for the imported genotype data
`replacements`	If `replaceBP = TRUE`, what would you like to replace the alleles with?