dumpBaseline: Export GSI baseline file
In mackerman44/idfgen: Import, Manipulate, and Export Genotype Data

Description Usage Arguments Author(s)

View source: R/dumpBaseline.r

dumpBaseline() exports a gsi baseline file in BAYES, SPAM, or gsi_sim format

dumpBaseline(x, markers, fileType, filename, findMarkers = NULL,
  replaceWith = NULL, removePrefix = NULL, replaceBP = TRUE,
  basePairs = c("A", "C", "G", "T", "-"), replacements = c("1", "2", "3",
  "4", "5"))

`x`	the list of populations to be included in gsi baseline file
`markers`	the markers to be included in gsi baseline file
`fileType`	the format of the exported gsi baseline file. Can be set to "SPAM", "BAYES", or "gsi_sim"
`filename`	what would you like to name the exported gsi baseline file
`findMarkers`	i don't remember what this does, just leave as the default `NULL`
`replaceWith`	something related to `findMarkers`. Also leave as the default `NULL`
`removePrefix`	this can be used to trim the marker names for "SPAM"
`replaceBP`	would you like to replace the allele names with something else. By default, `dumpBaseline()` replaces c("A","C","G","T","-") with c("1","2","3","4","5"). This can be set to "FALSE" to keep data in the original imported format. Alternatively, the `basePairs` and `replacements` arguments can be modified to accommodate any desired import or export format.
`basePairs`	If `replaceBP = TRUE`, the nomenclature used for the imported genotype data
`replacements`	If `replaceBP = TRUE`, what would you like to replace the alleles with?