dumpStructure: Export Structure file
In mackerman44/idfgen: Import, Manipulate, and Export Genotype Data

Description Usage Arguments Author(s)

View source: R/dumpStructure.r

dumpStructure() exports a file in Structure format

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dumpStructure(x, markers, filename, useIndNames = TRUE, popNumber = TRUE,
  replaceBP = TRUE, basePairs = c("A", "C", "G", "T", "-", "0"),
  replacements = c("1", "2", "3", "4", "5", "-9"))

`x`	the list of populations to be included in Genepop file
`markers`	the markers to be included in Genepop file
`filename`	what would you like to name the exported Genepop file?
`useIndNames`	would you like to use individual names `useIndNames = TRUE` or population name `useIndNames = FALSE` as the individual identifiers
`popNumber`	would you like to include a column in your Structure file that contains the putative population of origin?
`replaceBP`	would you like to replace the allele names with something else. By default, `dumpGenepop()` replaces c("A","C","G","T","-") with c("1","2","3","4","5"). This can be set to "FALSE" to keep data in the original imported format. Alternatively, the `basePairs` and `replacements` arguments can be modified to accommodate any desired import or export format.
`basePairs`	If `replaceBP = TRUE`, the nomenclature used for the imported genotype data
`replacements`	If `replaceBP = TRUE`, what would you like to replace the alleles with?