get_probe_names: get_probe_names

In magrichard/dmprocr: A R package that performs differential methylation profiles clustering

get_probe_names

Description

This function extracts probe names of a given gene from platform

Usage

get_probe_names(gene, pf_meth, pf_chr_colname = "Chromosome",
  pf_pos_colname = "Start", up_str = 5000, dwn_str = 5000)

Arguments

gene	A vector describing the gene (line of a bed file).
pf_meth	A data frame describing CpG positions.
pf_chr_colname	string matching the name of the column in the platform that contain the chromosome on which we find a probes.
pf_pos_colname	string matching the name of the column in the platform that contain the position information of probes.
up_str	An integer specifying up stream size (in bp).
dwn_str	An integer specifying down stream size (in bp).

Value

A vector of probe names

magrichard/dmprocr documentation built on July 21, 2023, 11:01 p.m.