select_candidates: Generate a candidate table

In magrichard/dmprocr: A R package that performs differential methylation profiles clustering

Generate a candidate table

Description

Generate a candidate table

Usage

select_candidates(gene_list, padj_thresh = 0, z_score_thresh,
  noCNVlog2FC_thresh)

Arguments

gene_list	A gene_list bedfile containing the log2FC, zscore and noCNVlog2FC values.
padj_thresh	A threshold p-value under which expression is significantly different by DESeq analysis
z_score_thresh	A threshold zscore value, candidate genes should display a zcore value such as -t_zscore<zscore<t_zscore
noCNVlog2FC_thresh	A threshold noCNVlog2FC, candidate genes should display a noCNVlog2FC value such as noCNVlog2FC > noCNVlog2FC_thresh or noCNVlog2FC < noCNVlog2FC_thresh

Value

A gene_list table including of candidate genes

magrichard/dmprocr documentation built on July 21, 2023, 11:01 p.m.