View source: R/trscr_analysis.R
noCNV_diffAnalysis | R Documentation |
Calculate differential expression on a subset of patient, in particular those with no CNV
noCNV_diffAnalysis(data_ntrscr, data_cnv, exp_grp, gene_list,
filter_indiv = "no_filter", contrast = c("tissue_status", "patho",
"normal"), no_cnv_filter = c(-0.2, 0.2))
data_ntrscr |
A |
data_cnv |
A |
exp_grp |
A |
gene_list |
A |
filter_indiv |
A vector of individual names to be screened for differential expression. Optionnal (set on "no_filter" by default). |
contrast |
A vector containing the constrast to be used to estimate the logarithmic fols change. By default: c("tissue_status","patho","normal") |
no_cnv_filter |
A vector of two values indicating the CNV values threshold for no CNV, by default set to c(-0.2, 0.2). |
A gene_list
table including a noCNVlog2FC value associated with differential expression between sample without CNV.
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