Man pages for maia-sh/pubmedparser
Fetch and Parse PubMed Records
| batch_dois | Batch DOIs for Eutils server limits |
| batch_fetch_pubmed_records | Get PMIDs and full PubMed records |
| batch_ids | Batch IDs for Eutils server limits |
| check_update_esearch | Check whether esearch still on server and if not re-search |
| convert_dois_to_pmids | Convert DOIs to PMIDs |
| convert_pmids_to_dois | Convert PMIDs to DOIs |
| create_query_strings | Create PubMed query strings |
| extract_datatype | Extract specified datatype from PubMed xml into csv |
| extract_dois_pmids | Extract PMIDs and DOIs from E-Utils esummary |
| fatcat_convert | Convert between PMIDs and DOIs using the... |
| fetch_batch | Fetch a batch of records |
| fetch_batches | Fetch batches of records |
| parse_abstract | Extract info about abstract from PubMed article |
| parse_authors | Extract info about authors from PubMed article |
| parse_batch | Parse batch of PubMed records and extract specified datatypes... |
| parse_batches | Read and parse doc of PubMed records and extract specified... |
| parse_databanks | Extract info about databanks from PubMed article |
| parse_doc | Read and parse doc of PubMed records and extract specified... |
| parse_keywords | Extract info about keywords from PubMed article |
| parse_mesh_terms | Extract info about MeSH terms from PubMed article |
| parse_pubmed_article | Extract summary info about PubMed article |
| parse_pubmed_article_set | Extract summary info about PubMed article set |
| parse_references | Extract info about references from PubMed article |
| pipe | Pipe operator |
| search_get_pmids | Run E-utilities search and save PMIDs |
| write_pubmed_files | Save PubMed files |
