Description Usage Arguments Examples
View source: R/fetch_batches.R
Batch IDs to account for Eutils server limits
1 2 3 4 5 6 7 8 9 10 11 12 |
esearch |
Esearch object. Generally the output of |
fetch_start |
Record fetch should start with. Default to 1. |
fetch_end |
Record fetch should end with. Defaults to NULL and dynamically set to max of esearch query.
@param batch_size Maximum batch size. Defaults to 10000, which is eutilities' limit.
@param sleep_time Sleep between queries to respect server limits. Defaults to 0.2 seconds.
@param dir Directory for saving files. Default to project root ( |
file_name |
Root for file names. Default to esearch query. |
quiet |
Whether to silence messages in console. Defaults to FALSE. |
save_each_batch |
Whether each batch should be saved as raw characters to file. Defaults to TRUE. |
save_all_batches |
Whether all batches should be saved as vector of raw characters to file and nodeset. Defaults to FALSE (NOTE: This parameter is in development and should be set to FALSE.) |
1 2 3 4 5 6 7 | ## Not run:
# Run search and don't save any output
records_search <- search_get_pmids(term = "aquilegia[TITLE]",
dir = NULL, output = NULL)
batch <- fetch_batches(records_search)
## End(Not run)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.