extract_datatype: Extract specified datatype from PubMed xml into csv

Description Usage Arguments

View source: R/extract_datatype.R

Description

Extract specified datatype from PubMed xml into csv

Usage

1
2
3
4
5
6
7
8
extract_datatype(
  datatype,
  nodes,
  file_name = "pubmed",
  suffix = NULL,
  dir = here::here(),
  quiet = FALSE
)

Arguments

datatype

Type of data to extract from xml for which there is a corresponding "pubmed_" function ("table", "abstract", "databanks", "authors", "mesh", "keywords", "pubtypes")

nodes

Article node set

file_name

Root for file names. Defaults to "pubmed".

suffix

Suffix for file names. For example, record numbers. Defaults to NULL.

dir

Directory for saving files. Defaults to project root (here::here())

quiet

Whether to silence messages in console. Defaults to FALSE.


maia-sh/pubmedparser documentation built on Feb. 18, 2021, 11:44 a.m.