search_get_pmids: Run E-utilities search and save PMIDs

In maia-sh/pubmedparser: Fetch and Parse PubMed Records

Description

Batch IDs to account for Eutils server limits

Usage

search_get_pmids(
  term,
  file_name = NULL,
  dir = here::here(),
  output = c("rda", "rds", "txt")
)

Arguments

term	Query for search
file_name	Root for file names. Default to NULL and dynamically set to esearch query.
dir	Directory for saving files. Default to project root (here::here())
output	Save full esearch record (as "rds") and/or PMIDs (as "rda" and/or "txt". Default to all (c("rda", "rds", "txt"))

Value

Esearch object

Examples

## Not run: 
# Run search and don't save any output
records_search <- search_get_pmids(term = "aquilegia[TITLE]",
                                   dir = NULL, output = NULL)

## End(Not run)

maia-sh/pubmedparser documentation built on Feb. 18, 2021, 11:44 a.m.