fatcat_convert: Convert between PMIDs and DOIs using the...

In maia-sh/pubmedparser: Fetch and Parse PubMed Records

Description

Non-vectorized function. Wrap in 'purrr::map_dfr()' to call on multiple ids. May further develop vectorized option with 'purrr::map()' or 'plyr::llply'.

Usage

fatcat_convert(id, type, quiet = TRUE)

Arguments

id	PMID (character) or DOI (character or numeric)
type	Character. Either "doi" or "pmid"
quiet	logical. Should success/error info be displayed? Default is TRUE.

Value

One row dataframe with DOI and PMID. If 'id' not found in Fatcat, returns 'id' and NA for other id type.

Examples

fatcat_convert(32786189, "pmid")
purrr::map_dfr(
  c("10.1056/NEJMoa1916623", "10.1038/ncomms11393", "10.5348/D01-2017-21-OA-1"),
  fatcat_convert,
  type = "doi"
)

maia-sh/pubmedparser documentation built on Feb. 18, 2021, 11:44 a.m.