Description Usage Arguments Value Examples
Batch IDs to account for Eutils server limits
1 2 3 4 5 6 7 8 9 10 | fetch_batch(
esearch,
batch_start = 1,
records_max = NULL,
batch_size = 10000,
save_file = TRUE,
dir = here::here(),
file_name = esearch$QueryTranslation,
quiet = FALSE
)
|
esearch |
Esearch object. Generally the output of |
batch_start |
Record batch should start with. Default to 1. |
records_max |
Max records to fetch. Defaults to NULL and dynamically set to max of esearch query. |
batch_size |
Maximum batch size. Defaults to 10000, which is eutilities' limit. |
save_file |
Whether batch should be saved as raw characters to file. Defaults to TRUE. |
dir |
Directory for saving files. Default to project root ( |
file_name |
Root for file names. Default to esearch query. |
quiet |
Whether to silence messages in console. Defaults to FALSE. |
Efetch object as raw characters
1 2 3 4 5 6 7 | ## Not run:
# Run search and don't save any output
records_search <- search_get_pmids(term = "aquilegia[TITLE]",
dir = NULL, output = NULL)
batch <- fetch_batch(records_search)
## End(Not run)
|
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