maialab/quincunx
REST API Client for the 'PGS' Catalog

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Source code
72
Man pages
85
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maialab/quincunx: REST API Client for the 'PGS' Catalog
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API

API for maialab/quincunx
REST API Client for the 'PGS' Catalog

Global functions
%>% Man page
[,cohorts,character,missing,missing-method Man page
[,cohorts,missing,missing,missing-method Man page
[,cohorts,numeric,missing,missing-method Man page
[,performance_metrics,character,missing,missing-method Man page
[,performance_metrics,missing,missing,missing-method Man page
[,performance_metrics,numeric,missing,missing-method Man page
[,publications,character,missing,missing-method Man page
[,publications,missing,missing,missing-method Man page
[,publications,numeric,missing,missing-method Man page
[,releases,Date,missing,missing-method Man page
[,releases,character,missing,missing-method Man page
[,releases,missing,missing,missing-method Man page
[,releases,numeric,missing,missing-method Man page
[,sample_sets,character,missing,missing-method Man page
[,sample_sets,missing,missing,missing-method Man page
[,sample_sets,numeric,missing,missing-method Man page
[,scores,character,missing,missing-method Man page
[,scores,missing,missing,missing-method Man page
[,scores,numeric,missing,missing-method Man page
[,trait_categories,character,missing,missing-method Man page
[,trait_categories,missing,missing,missing-method Man page
[,trait_categories,numeric,missing,missing-method Man page
[,traits,character,missing,missing-method Man page
[,traits,missing,missing,missing-method Man page
[,traits,numeric,missing,missing-method Man page
ancestry_categories Man page
as_tidy_tables_ancestry_categories Source code
as_tidy_tables_cohorts Source code
as_tidy_tables_performance_metrics Source code
as_tidy_tables_publications Source code
as_tidy_tables_releases Source code
as_tidy_tables_sample_sets Source code
as_tidy_tables_scores Source code
as_tidy_tables_trait_categories Source code
as_tidy_tables_traits Source code
bind Man page
clear_cache Man page Source code
coerce_to_s4_cohorts Source code
coerce_to_s4_performance_metrics Source code
coerce_to_s4_publications Source code
coerce_to_s4_releases Source code
coerce_to_s4_sample_sets Source code
coerce_to_s4_scores Source code
coerce_to_s4_trait_categories Source code
coerce_to_s4_traits Source code
cohorts Man page Source code
cohorts-class Man page
collect_ancestries Source code
collect_pgs_ids Man page Source code
collect_samples Man page Source code
contains_question_mark Man page Source code
count Man page Source code
drop_metadata_cols Source code
endofunction2 Source code
extract_from_comment Source code
filter_by_id Man page
first_non_na Man page Source code
get Source code
get_ancestry_categories Man page Source code
get_ancestry_categories_all Source code
get_ancestry_category Source code
get_ancestry_symbol_mappings Man page Source code
get_cohort Source code
get_cohort_all Source code
get_cohort_by_cohort_symbol Source code
get_cohorts Man page Source code
get_gwas_get_score_ids Source code
get_gwas_get_score_ids_by_gcst_id Source code
get_performance Source code
get_performance_all Source code
get_performance_by_pgs_id Source code
get_performance_by_ppm_id Source code
get_performance_metrics Man page Source code
get_publication Source code
get_publication_all Source code
get_publication_by_author Source code
get_publication_by_pgp_id Source code
get_publication_by_pgs_id Source code
get_publication_by_pubmed_id Source code
get_publications Man page Source code
get_release Source code
get_release_all Source code
get_release_by_release_date Source code
get_release_current Source code
get_releases Man page Source code
get_sample_set Source code
get_sample_sets Man page Source code
get_sample_sets_all Source code
get_sample_sets_by_pgs_id Source code
get_sample_sets_by_pss_id Source code
get_score Source code
get_score_all Source code
get_score_by_pgs_id Source code
get_score_by_pubmed_id Source code
get_score_by_trait_id Source code
get_scores Man page Source code
get_trait Source code
get_trait_all Source code
get_trait_by_efo_id Source code
get_trait_by_trait_term Source code
get_trait_categories Man page Source code
get_trait_category Source code
get_trait_category_all Source code
get_traits Man page Source code
intersect Man page
is_json_empty Source code
is_paginated Man page Source code
is_pgs_id Man page Source code
is_pubmed_id Man page Source code
list_to_s4 Man page Source code
make_paginated Source code
msg_400 Man page Source code
msg_404 Man page Source code
msg_empty Man page Source code
n Man page
n,cohorts-method Man page
n,performance_metrics-method Man page
n,publications-method Man page
n,releases-method Man page
n,sample_sets-method Man page
n,scores-method Man page
n,trait_categories-method Man page
n,traits-method Man page
n_pages Man page Source code
no_msg Man page Source code
nr_to_na Man page Source code
offsets Man page Source code
open_in_dbsnp Man page Source code
open_in_pgs_catalog Man page Source code
open_in_pubmed Man page Source code
p_endofunction Source code
performance_metrics Man page Source code
performance_metrics-class Man page
pgp_to_pgs Man page Source code
pgp_to_ppm Man page Source code
pgp_to_pss Man page Source code
pgs_ids_tbl Source code
pgs_server Man page Source code
pgs_to_pgp Man page Source code
pgs_to_ppm Man page Source code
pgs_to_pss Man page Source code
pgs_to_study Man page Source code
ppm_to_pgp Man page Source code
ppm_to_pgs Man page Source code
ppm_to_pss Man page Source code
predicate2 Source code
pss_to_pgp Man page Source code
pss_to_pgs Man page Source code
pss_to_ppm Man page Source code
publications Man page Source code
publications-class Man page
publications_tbl Source code
read_comment_block Source code
read_file_column_names Source code
read_one_pgs_scoring_file Source code
read_one_pgs_scoring_file_safe Source code
read_pgs_scoring_file_data Source code
read_pgs_scoring_file_metadata Source code
read_scoring_file Man page Source code
releases Man page Source code
releases-class Man page
relocate_metadata_cols Source code
remap_id Man page Source code
request Man page Source code
request_all Man page Source code
request_msg Source code
request_warning Man page Source code
s4_to_list Man page Source code
s4cohorts_cohorts_tbl Source code
s4cohorts_pgs_ids_tbl Source code
s4ppm_demographics_tbl Source code
s4ppm_performance_metrics_tbl Source code
s4ppm_pgs_classification_metrics_tbl Source code
s4ppm_pgs_cohorts_tbl Source code
s4ppm_pgs_effect_sizes_tbl Source code
s4ppm_pgs_other_metrics_tbl Source code
s4ppm_publications_tbl Source code
s4ppm_sample_sets_tbl Source code
s4ppm_samples_tbl Source code
s4pss_demographics_tbl Source code
s4pss_pgs_cohorts_tbl Source code
s4pss_sample_sets_tbl Source code
s4pss_samples_tbl Source code
s4releases_pgp_ids_tbl Source code
s4releases_pgs_ids_tbl Source code
s4releases_ppm_ids_tbl Source code
s4releases_releases_tbl Source code
s4scores_ancestry_frequencies_tbl Source code
s4scores_cohorts_tbl Source code
s4scores_demographics_tbl Source code
s4scores_multi_ancestry_composition_tbl Source code
s4scores_publications_tbl Source code
s4scores_samples_tbl Source code
s4scores_scores_tbl Source code
s4scores_stages_tally_tbl Source code
s4scores_traits_tbl Source code
s4trait_categories_trait_categories_tbl Source code
s4trait_categories_traits_tbl Source code
s4traits_child_pgs_ids_tbl Source code
s4traits_pgs_ids_tbl Source code
s4traits_trait_categories_tbl Source code
s4traits_trait_mapped_terms_tbl Source code
s4traits_trait_synonyms_tbl Source code
s4traits_traits_tbl Source code
sample_sets Man page Source code
sample_sets-class Man page
scores Man page Source code
scores-class Man page
setdiff Man page
setequal Man page
setop Man page
stages Man page
study_to_pgs Man page Source code
subset-cohorts Man page
subset-performance_metrics Man page
subset-publications Man page
subset-releases Man page
subset-sample_sets Man page
subset-scores Man page
subset-trait_categories Man page
subset-traits Man page
sure Man page Source code
trait_categories Man page Source code
trait_categories-class Man page
traits Man page Source code
traits-class Man page
union Man page
unpack_performance_metric Source code
unwrap_ancestry_count Source code
unwrap_ancestry_frequencies Source code
unwrap_cohort Source code
unwrap_cohort_extended Source code
unwrap_demographic Source code
unwrap_demographics Source code
unwrap_efotrait Source code
unwrap_interval Source code
unwrap_metric Source code
unwrap_multi_ancestry_composition Source code
unwrap_performance_metric Source code
unwrap_publication Source code
unwrap_publication_extended Source code
unwrap_publication_pgs_ids Source code
unwrap_release Source code
unwrap_release_pgp_ids Source code
unwrap_release_pgs_ids Source code
unwrap_release_ppm_ids Source code
unwrap_sample Source code
unwrap_sample_set Source code
unwrap_score Source code
unwrap_scores_cohorts Source code
unwrap_scores_demographics Source code
unwrap_scores_samples Source code
unwrap_traits Source code
unwrap_traits2 Source code
user_agent_id Man page Source code
write_xlsx Man page Source code
maialab/quincunx documentation built on Aug. 18, 2022, 5:31 a.m.

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