Description Usage Format See Also Examples
Kind of obsolete since the introduction of all_graphs
.
A comprehensive listing of all the 21 admixture graphs with six leaves and
at most one admixture event. Our convention is that the position of the root does
not matter (as long as it's not after an admixture event) and that graphs that have
eyes, two inner nodes with the property that all the paths between any two
leaves visits both or neither of them, are excluded. The reason is that the f
statistics can't detect the exact position of the root or distinguish between an
eye and a simple branch. The position of the root can be moved later with the function
make_an_outgroup
.
1 |
A list of functions on six leaves and a parameter permutations
which
is FALSE
by default.
The outputs of these functions are either single agraph
objects
with the input vector as leaves, or if permutations
is TRUE
,
lists of all the possible agraph
objects with that leaf set up
to symmetry.
Other graphs: eight_leaves_trees
,
five_leaves_graphs
,
four_leaves_graphs
,
seven_leaves_graphs
1 2 3 4 5 6 7 8 9 | # While the usage of this function is pretty self-explanatory, let's plot all the graphs
# just for browsing.
for (i in seq(1, length(six_leaves_graphs))) {
graph <- six_leaves_graphs[[i]](c("A", "B", "C", "D", "E", "F"))
# This is how you include quotation marks in strings by the way:
title <- paste("six_leaves_graphs[[", i,
"]](c(\"A\", \"B\", \"C\", \"D\", \"E\", \"F\"))", sep = "")
plot(graph, color = "yellow4", title = title)
}
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.