API for malnirav/hiReadsProcessor
Functions to process LM-PCR reads from 454/Illumina data

Global functions
addFeature Man page Source code
addListNameToReads Man page Source code
annotateSites Man page Source code
blatListedSet Man page Source code
blatSeqs Man page Source code
checkArgsSetDefaults_ALIGNed Source code
checkArgs_SEQed Source code
chunkize Man page Source code
clusterSites Man page Source code
crossOverCheck Man page Source code
decodeByBarcode Man page
dereplicateReads Man page Source code
doRCtest Man page Source code
extractFeature Man page Source code
extractSeqs Man page Source code
findAndRemoveVector Man page Source code
findAndTrimSeq Man page Source code
findBarcodes Man page Source code
findIntegrations Man page Source code
findLTRs Man page Source code
findLinkers Man page Source code
findPrimers Man page Source code
findVector Man page Source code
getIntegrationSites Man page Source code
getSectorsForSamples Man page Source code
getSonicAbund Man page Source code
hiReadsProcessor Man page
hiReadsProcessor-package Man page
isuSites Man page Source code
otuSites Man page Source code
pairUpAlignments Man page Source code
pairwiseAlignSeqs Man page Source code
primerIDAlignSeqs Man page Source code
psl Man page
pslCols Man page Source code
pslToRangedObject Man page Source code
read.BAMasPSL Man page Source code
read.SeqFolder Man page Source code
read.blast8 Man page Source code
read.psl Man page Source code
read.sampleInfo Man page Source code
read.seqsFromSector Man page Source code
removeReadsWithNs Man page Source code
replicateReads Man page Source code
sampleSummary Man page Source code
seqProps Man page
showFindStats Source code
splitByBarcode Man page Source code
splitSeqsToFiles Man page Source code
startgfServer Man page Source code
stopgfServer Man page Source code
trimSeqs Man page Source code
troubleshootLinkers Man page Source code
uniqueLength Source code
vpairwiseAlignSeqs Man page Source code
write.listedDNAStringSet Man page Source code
write.psl Man page Source code
malnirav/hiReadsProcessor documentation built on Sept. 17, 2017, 10:56 a.m.