Files in malnirav/hiReadsProcessor
Functions to process LM-PCR reads from 454/Illumina data

.BBSoptions
.Rbuildignore
.Rinstignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/hiReadsProcessor.R README.md
data/FLX_seqProps.RData
data/psl.RData
hiReadsProcessor.Rproj
inst/extdata/FLX_sample_run/RunData/1.TCA.454Reads.fna
inst/extdata/FLX_sample_run/RunData/1.TCA.454Reads.fna.gz
inst/extdata/FLX_sample_run/RunData/2.TCA.454Reads.fna
inst/extdata/FLX_sample_run/RunData/2.TCA.454Reads.fna.gz
inst/extdata/FLX_sample_run/RunData/3.TCA.454Reads.fna
inst/extdata/FLX_sample_run/RunData/3.TCA.454Reads.fna.gz
inst/extdata/FLX_sample_run/Vectors/HIV1.fa
inst/extdata/FLX_sample_run/Vectors/MLV-vector.fa
inst/extdata/FLX_sample_run/sampleInfo.xls
inst/extdata/FLX_sample_run/sampleInfo.xlsx
inst/tests/runTests.R inst/tests/tests/test_coreFeatures.R man/addFeature.Rd man/addListNameToReads.Rd man/annotateSites.Rd man/blatListedSet.Rd man/blatSeqs.Rd man/chunkize.Rd man/clusterSites.Rd man/crossOverCheck.Rd man/dereplicateReads.Rd man/doRCtest.Rd man/extractFeature.Rd man/extractSeqs.Rd man/findAndRemoveVector.Rd man/findAndTrimSeq.Rd man/findBarcodes.Rd man/findIntegrations.Rd man/findLTRs.Rd man/findLinkers.Rd man/findPrimers.Rd man/findVector.Rd man/getIntegrationSites.Rd man/getSectorsForSamples.Rd man/getSonicAbund.Rd man/hiReadsProcessor.Rd man/isuSites.Rd man/otuSites.Rd man/pairUpAlignments.Rd man/pairwiseAlignSeqs.Rd man/primerIDAlignSeqs.Rd man/psl.Rd man/pslCols.Rd man/pslToRangedObject.Rd man/read.BAMasPSL.Rd man/read.SeqFolder.Rd man/read.blast8.Rd man/read.psl.Rd man/read.sampleInfo.Rd man/read.seqsFromSector.Rd man/removeReadsWithNs.Rd man/replicateReads.Rd man/sampleSummary.Rd man/seqProps.Rd man/splitByBarcode.Rd man/splitSeqsToFiles.Rd man/startgfServer.Rd man/trimSeqs.Rd man/troubleshootLinkers.Rd man/vpairwiseAlignSeqs.Rd man/write.listedDNAStringSet.Rd man/write.psl.Rd tests/testthat/runTests.R tests/testthat/test_coreFeatures.R vignettes/Tutorial.Rmd vignettes/Tutorial.md
vignettes/hiReadsProcessor_object.png
vignettes/hiReadsProcessor_workflow.png
malnirav/hiReadsProcessor documentation built on Sept. 17, 2017, 10:56 a.m.