Files in manlius/muxViz
MuxViz - Visualization and Analysis of Multilayer Networks

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/aux_functions.R R/muxLib_annotated.R R/muxLib_plot_functions.R README.Rmd
README.html
README.md
_pkgdown.yml
docs/404.html
docs/LICENSE-text.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/index.html
docs/articles/ml_community.html
docs/articles/ml_community_files/header-attrs-2.11/header-attrs.js
docs/articles/ml_community_files/header-attrs-2.7/header-attrs.js
docs/articles/ml_motifs.html
docs/articles/ml_motifs_files/header-attrs-2.11/header-attrs.js
docs/articles/ml_motifs_files/header-attrs-2.7/header-attrs.js
docs/articles/setup_infomap_fanmod.html
docs/articles/setup_infomap_fanmod_files/header-attrs-2.11/header-attrs.js
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docs/reference/BuildDensityMatrixBGS.html
docs/reference/BuildExtendedEdgelistFromSupraAdjacencyMatrix.html
docs/reference/BuildLayersTensor.html
docs/reference/BuildSupraAdjacencyMatrixFromEdgeColoredMatrices.html
docs/reference/BuildSupraAdjacencyMatrixFromExtendedEdgelist.html
docs/reference/BuildSupraTransitionMatrixFromSupraAdjacencyMatrix.html
docs/reference/BuildTransitionMatrixFromEdgeColoredMatrices.html
docs/reference/BuildTransitionMatrixFromSingleLayer.html
docs/reference/CanonicalVector.html
docs/reference/GetAggregateMatrix.html
docs/reference/GetAggregateMatrixFromNetworkList.html
docs/reference/GetAggregateMatrixFromSupraAdjacencyMatrix.html
docs/reference/GetAggregateNetworkFromNetworkList.html
docs/reference/GetAggregateNetworkFromSupraAdjacencyMatrix.html
docs/reference/GetAverageGlobalClustering.html
docs/reference/GetAverageGlobalNodeOverlappingMatrix.html
docs/reference/GetAverageGlobalOverlapping.html
docs/reference/GetAverageGlobalOverlappingMatrix.html
docs/reference/GetConfigurationModelTypeIFromNetworkList.html
docs/reference/GetConfigurationModelTypeIIFromNetworkList.html
docs/reference/GetConnectedComponents.html
docs/reference/GetCoverageEvolutionEdgeColored.html
docs/reference/GetCoverageEvolutionMultilayer.html
docs/reference/GetCoverageEvolutionSingleLayer.html
docs/reference/GetEigenvaluesOfDensityMatrix.html
docs/reference/GetEigenvaluesOfDensityMatrixFromAdjacencyMatrix.html
docs/reference/GetGiantConnectedComponent.html
docs/reference/GetGiantIntersectionComponent.html
docs/reference/GetGiantIntersectionComponentFromNetworkList.html
docs/reference/GetGiantViableComponent.html
docs/reference/GetGiantViableComponentFromNetworkList.html
docs/reference/GetGlobalNumberTriangles.html
docs/reference/GetInterAssortativityTensor.html
docs/reference/GetJensenShannonDivergence.html
docs/reference/GetLaplacianMatrix.html
docs/reference/GetLargestEigenv.html
docs/reference/GetLocalClustering.html
docs/reference/GetMonoplexTriads.html
docs/reference/GetMultiAuthCentrality.html
docs/reference/GetMultiClosenessCentrality.html
docs/reference/GetMultiDegree.html
docs/reference/GetMultiDegreeSum.html
docs/reference/GetMultiEigenvectorCentrality.html
docs/reference/GetMultiHubCentrality.html
docs/reference/GetMultiInDegree.html
docs/reference/GetMultiInDegreeSum.html
docs/reference/GetMultiInStrength.html
docs/reference/GetMultiInStrengthSum.html
docs/reference/GetMultiKCoreCentrality.html
docs/reference/GetMultiKatzCentrality.html
docs/reference/GetMultiOutDegree.html
docs/reference/GetMultiOutDegreeSum.html
docs/reference/GetMultiOutStrength.html
docs/reference/GetMultiOutStrengthSum.html
docs/reference/GetMultiPageRankCentrality.html
docs/reference/GetMultiPathStatistics.html
docs/reference/GetMultiRWCentrality.html
docs/reference/GetMultiStrength.html
docs/reference/GetMultiStrengthSum.html
docs/reference/GetMultilayerCommunities_Infomap.html
docs/reference/GetMultilayerMotifs.html
docs/reference/GetMultilayerMotifsFromNetworkList.html
docs/reference/GetMultilayerReducibility.html
docs/reference/GetMultiplexCommunities_Infomap.html
docs/reference/GetMultiplexTriads.html
docs/reference/GetMultiplexTriadsFromNetworkList.html
docs/reference/GetMultiplexityCentrality.html
docs/reference/GetNormalizedLaplacianMatrix.html
docs/reference/GetRenyiEntropyFromAdjacencyMatrix.html
docs/reference/GetRewiredLayerWithOverlappingEdges.html
docs/reference/GetSPSimilarityMatrix.html
docs/reference/GetSampleMultiplex.html
docs/reference/MultiShortestPathFromNode.html
docs/reference/ShortestPathFromNode.html
docs/reference/SolveEigenvalueProblem.html
docs/reference/SupraAdjacencyToBlockTensor.html
docs/reference/SupraAdjacencyToNetworkList.html
docs/reference/SupraAdjacencyToNodesTensor.html
docs/reference/binarizeMatrix.html
docs/reference/blkdiag.html
docs/reference/buildMultilayerNetworkFromMuxvizFiles.html
docs/reference/diagR.html
docs/reference/figures/backmaps.png
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examples-scripts/structural_reducibility.R examples-scripts/versatility_measures.R gui-old/CREDITS.md gui-old/README.md gui-old/TODO.md gui-old/TROUBLESHOOTING.md gui-old/USAGE.md
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gui-old/data/DanioRerio/danioRerio_list.txt
gui-old/data/DanioRerio/edge_list_danioRerio_layer1.txt
gui-old/data/DanioRerio/edge_list_danioRerio_layer2.txt
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gui-old/data/EUAirports/edge_list_airline-europe_layer4.txt
gui-old/data/Florentine/Florentine-Families_aggregate.edges
gui-old/data/Florentine/Florentine-Families_aggregate_config.txt
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gui-old/data/Florentine/Florentine-Families_layers.txt
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gui-old/data/StarWars/StarWars_config.txt
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gui-old/data/general_multilayer/general_multilayer_layout.txt
gui-old/data/interdependent6/external_edge_color_size.txt
gui-old/data/interdependent6/external_node_color_size.txt
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gui-old/data/multiplex6/multiplex6_layers.txt
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gui-old/export/empty
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gui-old/gallery/monoxViz_community_example2.png
gui-old/gallery/monoxViz_london_tube.png
gui-old/gallery/monoxViz_yeast_interaction_lcc.png
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gui-old/theory/illustrations/motifs_mux.png
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gui-old/theory/illustrations/random_walk.png
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gui-old/theory/illustrations/rank4_flattening.png
gui-old/theory/illustrations/shrinking_multiplex.png
gui-old/theory/illustrations/social_mux.png
gui-old/theory/illustrations/state_nodes.png
gui-old/theory/illustrations/tensors.png
gui-old/theory/illustrations/transport_multimodal.png
gui-old/theory/illustrations/triadic_multiplex.png
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gui-old/ui.R gui-old/version.R
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gui-old/www/example_layer.txt
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gui-old/www/genlouvain_license.txt
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index.Rmd
index.html
index.md man/BuildDensityMatrixBGS.Rd man/BuildExtendedEdgelistFromSupraAdjacencyMatrix.Rd man/BuildLayersTensor.Rd man/BuildSupraAdjacencyMatrixFromEdgeColoredMatrices.Rd man/BuildSupraAdjacencyMatrixFromExtendedEdgelist.Rd man/BuildSupraTransitionMatrixFromSupraAdjacencyMatrix.Rd man/BuildTransitionMatrixFromEdgeColoredMatrices.Rd man/BuildTransitionMatrixFromSingleLayer.Rd man/CanonicalVector.Rd man/GetAggregateMatrix.Rd man/GetAggregateMatrixFromNetworkList.Rd man/GetAggregateMatrixFromSupraAdjacencyMatrix.Rd man/GetAggregateNetworkFromNetworkList.Rd man/GetAggregateNetworkFromSupraAdjacencyMatrix.Rd man/GetAverageGlobalClustering.Rd man/GetAverageGlobalNodeOverlappingMatrix.Rd man/GetAverageGlobalOverlapping.Rd man/GetAverageGlobalOverlappingMatrix.Rd man/GetConfigurationModelTypeIFromNetworkList.Rd man/GetConfigurationModelTypeIIFromNetworkList.Rd man/GetConnectedComponents.Rd man/GetCoverageEvolutionEdgeColored.Rd man/GetCoverageEvolutionMultilayer.Rd man/GetCoverageEvolutionSingleLayer.Rd man/GetEigenvaluesOfDensityMatrix.Rd man/GetEigenvaluesOfDensityMatrixFromAdjacencyMatrix.Rd man/GetGiantConnectedComponent.Rd man/GetGiantIntersectionComponent.Rd man/GetGiantIntersectionComponentFromNetworkList.Rd man/GetGiantViableComponent.Rd man/GetGiantViableComponentFromNetworkList.Rd man/GetGlobalNumberTriangles.Rd man/GetInterAssortativityTensor.Rd man/GetJensenShannonDivergence.Rd man/GetLaplacianMatrix.Rd man/GetLargestEigenv.Rd man/GetLocalClustering.Rd man/GetMonoplexTriads.Rd man/GetMultiAuthCentrality.Rd man/GetMultiClosenessCentrality.Rd man/GetMultiDegree.Rd man/GetMultiDegreeSum.Rd man/GetMultiEigenvectorCentrality.Rd man/GetMultiHubCentrality.Rd man/GetMultiInDegree.Rd man/GetMultiInDegreeSum.Rd man/GetMultiInStrength.Rd man/GetMultiInStrengthSum.Rd man/GetMultiKCoreCentrality.Rd man/GetMultiKatzCentrality.Rd man/GetMultiOutDegree.Rd man/GetMultiOutDegreeSum.Rd man/GetMultiOutStrength.Rd man/GetMultiOutStrengthSum.Rd man/GetMultiPageRankCentrality.Rd man/GetMultiPathStatistics.Rd man/GetMultiRWCentrality.Rd man/GetMultiStrength.Rd man/GetMultiStrengthSum.Rd man/GetMultilayerCommunities_Infomap.Rd man/GetMultilayerMotifs.Rd man/GetMultilayerMotifsFromNetworkList.Rd man/GetMultilayerReducibility.Rd man/GetMultiplexCommunities_Infomap.Rd man/GetMultiplexTriads.Rd man/GetMultiplexTriadsFromNetworkList.Rd man/GetMultiplexityCentrality.Rd man/GetNormalizedLaplacianMatrix.Rd man/GetRenyiEntropyFromAdjacencyMatrix.Rd man/GetRewiredLayerWithOverlappingEdges.Rd man/GetSPSimilarityMatrix.Rd man/GetSampleMultiplex.Rd man/MultiShortestPathFromNode.Rd man/ShortestPathFromNode.Rd man/SolveEigenvalueProblem.Rd man/SupraAdjacencyToBlockTensor.Rd man/SupraAdjacencyToNetworkList.Rd man/SupraAdjacencyToNodesTensor.Rd man/binarizeMatrix.Rd man/blkdiag.Rd man/buildMultilayerNetworkFromMuxvizFiles.Rd man/diagR.Rd
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src-exe/infomap-0.x/examples/python/Makefile
src-exe/infomap-0.x/examples/python/example-bipartite.py
src-exe/infomap-0.x/examples/python/example-file-io.py
src-exe/infomap-0.x/examples/python/example-multiplex.py
src-exe/infomap-0.x/examples/python/example-networkx.py
src-exe/infomap-0.x/examples/python/example-simple.py
src-exe/infomap-0.x/examples/python/example-trigram-expanded.py
src-exe/infomap-0.x/examples/python/example-trigram.py
src-exe/infomap-0.x/examples/python/infomap-examples.ipynb
src-exe/infomap-0.x/interfaces/js/pre-worker-module.js
src-exe/infomap-0.x/interfaces/python/setup.py
src-exe/infomap-0.x/interfaces/swig/Config.i
src-exe/infomap-0.x/interfaces/swig/Date.i
src-exe/infomap-0.x/interfaces/swig/HierarchicalNetwork.i
src-exe/infomap-0.x/interfaces/swig/Infomap.i
src-exe/infomap-0.x/interfaces/swig/MemNetwork.i
src-exe/infomap-0.x/interfaces/swig/MultiplexNetwork.i
src-exe/infomap-0.x/interfaces/swig/Network.i
src-exe/infomap-0.x/ninetriangles.net
src-exe/infomap-0.x/src/CApi.cpp
src-exe/infomap-0.x/src/Infomap.cpp
src-exe/infomap-0.x/src/Infomap.h
src-exe/infomap-0.x/src/Informatter.cpp
src-exe/infomap-0.x/src/infomap/Edge.h
src-exe/infomap-0.x/src/infomap/FlowNetwork.cpp
src-exe/infomap-0.x/src/infomap/FlowNetwork.h
src-exe/infomap-0.x/src/infomap/InfomapBase.cpp
src-exe/infomap-0.x/src/infomap/InfomapBase.h
src-exe/infomap-0.x/src/infomap/InfomapContext.cpp
src-exe/infomap-0.x/src/infomap/InfomapContext.h
src-exe/infomap-0.x/src/infomap/InfomapGreedy.h
src-exe/infomap-0.x/src/infomap/InfomapGreedyCommon.h
src-exe/infomap-0.x/src/infomap/InfomapGreedySpecialized.h
src-exe/infomap-0.x/src/infomap/InfomapGreedyTypeSpecialized.h
src-exe/infomap-0.x/src/infomap/MemFlowNetwork.cpp
src-exe/infomap-0.x/src/infomap/MemFlowNetwork.h
src-exe/infomap-0.x/src/infomap/MemNetwork.cpp
src-exe/infomap-0.x/src/infomap/MemNetwork.h
src-exe/infomap-0.x/src/infomap/MemoryNetworkAdapter.cpp
src-exe/infomap-0.x/src/infomap/MemoryNetworkAdapter.h
src-exe/infomap-0.x/src/infomap/MultiplexNetwork.cpp
src-exe/infomap-0.x/src/infomap/MultiplexNetwork.h
src-exe/infomap-0.x/src/infomap/Network.cpp
src-exe/infomap-0.x/src/infomap/Network.h
src-exe/infomap-0.x/src/infomap/NetworkAdapter.cpp
src-exe/infomap-0.x/src/infomap/NetworkAdapter.h
src-exe/infomap-0.x/src/infomap/Node.cpp
src-exe/infomap-0.x/src/infomap/Node.h
src-exe/infomap-0.x/src/infomap/NodeFactory.h
src-exe/infomap-0.x/src/infomap/TreeData.cpp
src-exe/infomap-0.x/src/infomap/TreeData.h
src-exe/infomap-0.x/src/infomap/flowData.h
src-exe/infomap-0.x/src/infomap/flowData_traits.h
src-exe/infomap-0.x/src/infomap/treeIterators.h
src-exe/infomap-0.x/src/io/BipartiteClusterReader.cpp
src-exe/infomap-0.x/src/io/BipartiteClusterReader.h
src-exe/infomap-0.x/src/io/ClusterReader.cpp
src-exe/infomap-0.x/src/io/ClusterReader.h
src-exe/infomap-0.x/src/io/Config.h
src-exe/infomap-0.x/src/io/HierarchicalNetwork.cpp
src-exe/infomap-0.x/src/io/HierarchicalNetwork.h
src-exe/infomap-0.x/src/io/ProgramInterface.cpp
src-exe/infomap-0.x/src/io/ProgramInterface.h
src-exe/infomap-0.x/src/io/SafeFile.h
src-exe/infomap-0.x/src/io/TreeDataWriter.cpp
src-exe/infomap-0.x/src/io/TreeDataWriter.h
src-exe/infomap-0.x/src/io/convert.h
src-exe/infomap-0.x/src/io/version.cpp
src-exe/infomap-0.x/src/io/version.h
src-exe/infomap-0.x/src/utils/Date.h
src-exe/infomap-0.x/src/utils/FileURI.cpp
src-exe/infomap-0.x/src/utils/FileURI.h
src-exe/infomap-0.x/src/utils/Logger.cpp
src-exe/infomap-0.x/src/utils/Logger.h
src-exe/infomap-0.x/src/utils/MersenneTwister.h
src-exe/infomap-0.x/src/utils/Stopwatch.h
src-exe/infomap-0.x/src/utils/gap_iterator.h
src-exe/infomap-0.x/src/utils/infomath.h
src-exe/infomap-0.x/src/utils/types.h
src-exe/multiplex-infomap_macosx
src-exe/multiplex-infomap_windows.exe
vignettes/.gitignore
vignettes/ml_community.Rmd vignettes/ml_motifs.Rmd
vignettes/multimap_example2_expanded.clu
vignettes/multimap_example2_expanded.map
vignettes/multimap_example2_expanded.tree
vignettes/multimap_example2_infomap.edges
vignettes/multimap_example_expanded.clu
vignettes/multimap_example_expanded.map
vignettes/multimap_example_expanded.tree
vignettes/multimap_example_hp_expanded.clu
vignettes/multimap_example_hp_expanded.map
vignettes/multimap_example_hp_expanded.tree
vignettes/multimap_example_hp_infomap.edges
vignettes/multimap_example_infomap.edges
vignettes/setup_infomap_fanmod.Rmd
manlius/muxViz documentation built on March 1, 2023, 10:28 a.m.