get.location: Load genomic locations from biomart
In marchinilab/SDAtools: SDAtools: A toolkit for SDA
Description
Usage
Arguments
Value
Description
get.location Load genome locations for a list of genes
Usage
1
get.location(gene.symbols, data_set, gene_name)
Arguments
gene.symbols
character vector; Vector of gene names to look up genomic coordinates for
data_set
character; which dataset from Ensembl should be used, e.g. "mmusculus_gene_ensembl" or "hsapiens_gene_ensembl"
gene_name
character; which biomart value to use for matching e.g. "external_gene_name"
Value
data.table with columns: "gene_symbol", "chromosome_name" and "start_position"
marchinilab/SDAtools documentation built on Jan. 31, 2020, 3:51 a.m.
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Description Usage Arguments Value
Description
get.location Load genome locations for a list of genes
Usage
1 | get.location(gene.symbols, data_set, gene_name)
|
Arguments
gene.symbols |
character vector; Vector of gene names to look up genomic coordinates for |
data_set |
character; which dataset from Ensembl should be used, e.g. "mmusculus_gene_ensembl" or "hsapiens_gene_ensembl" |
gene_name |
character; which biomart value to use for matching e.g. "external_gene_name" |
Value
data.table with columns: "gene_symbol", "chromosome_name" and "start_position"
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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