highest_genes: Which gene has the highest loading for a given component

In marchinilab/SDAtools: SDAtools: A toolkit for SDA

Description

which_gene plot gene loadings for a given component

Usage

highest_genes(results, component, omic = 1, max.items = 20,
  label.size = 3, label.repel = 1)

Arguments

results	list; object containing result (output of read_output)
component	character string; name or index of component
omic	integer or character; index of the omic type to calculate contributions for, or name of omic type if you assigned a name
max.items	integer; the number of components to label
label.size	numeric; size of point labels
label.repel	numeric; force of label repulsion

Value

A ggplot2 object

Examples

data(results)
highest_genes(results, 8)

marchinilab/SDAtools documentation built on Jan. 31, 2020, 3:51 a.m.