Description Usage Arguments Value Examples
load_gene_locations
Load gene coordinates from Ensembl biomart or Cached data
1 2 | load_gene_locations(genes = NULL, cache = TRUE, path = "",
organism = "mmusculus_gene_ensembl", name = "mouse")
|
genes |
character vector; Vector of gene names to look up genomic coordinates for |
cache |
logical; If TRUE a cache of the downloaded locations will be saved for quick loading next time |
path |
character; string of path where the cached location file should be saved |
organism |
character; which dataset from Ensembl should be used, e.g. "mmusculus_gene_ensembl" or "hsapiens_gene_ensembl" |
name |
character; descriptive name of dataset, this will be appended to the standard cache file name when saving / loading the cache |
A data table of genes chromosome and coordinate.
1 2 |
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