copy_number: Get copy number.
In markgene/yamat: Yet Another Methylation Array Toolkit
copy_number R Documentation
Get copy number.
Description
The function returns copy number.
Usage
copy_number(x, log2_transform = FALSE, offset = 1)
Arguments
x
An object of MethylSet-class or
GenomicMethylSet-class.
log2_transform
A logical scalar. Default to FALSE.
offset
A numeric scalar. It is only applicable when log2 transform
is carried out. Default to 1.
Value
A matrix.
Note
getCN returns the log2 value of meth + unmeth. If
the sum is zero, NA is returned.
markgene/yamat documentation built on Aug. 26, 2024, 11:56 p.m.
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| copy_number | R Documentation |
Get copy number.
Description
The function returns copy number.
Usage
copy_number(x, log2_transform = FALSE, offset = 1)
Arguments
x |
An object of |
log2_transform |
A logical scalar. Default to FALSE. |
offset |
A numeric scalar. It is only applicable when log2 transform is carried out. Default to 1. |
Value
A matrix.
Note
getCN returns the log2 value of meth + unmeth. If
the sum is zero, NA is returned.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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