plot_control_probes: Quality control plot of control probes in terms of raw...
In markgene/yamat: Yet Another Methylation Array Toolkit
View source: R/control-probes.R
plot_control_probes R Documentation
Quality control plot of control probes in terms of raw intensities.
Description
Quality control plot of control probes in terms of raw intensities.
Usage
plot_control_probes(x, s = 1)
Arguments
x
An object of RGChannelSet-class.
s
An integer scalar. Default to 1.
Value
A list of df, red_plot, green_plot,
norm_plot, independent_control_plot.
The df is a data.frame containing the following columns:
Address, Type, Color, ExtendedType, Channel, Expected_Grn, Expected_Red,
Sample, and Intensity.
Each of the red_plot, green_plot, norm_plot and
independent_control_plot is an object of ggplot
class. They are plots of sample-dependent controls of red and green channel,
normalization probes and sample-independent controls, respectively.
markgene/yamat documentation built on Aug. 26, 2024, 11:56 p.m.
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View source: R/control-probes.R
| plot_control_probes | R Documentation |
Quality control plot of control probes in terms of raw intensities.
Description
Quality control plot of control probes in terms of raw intensities.
Usage
plot_control_probes(x, s = 1)
Arguments
x |
An object of |
s |
An integer scalar. Default to 1. |
Value
A list of df, red_plot, green_plot,
norm_plot, independent_control_plot.
The df is a data.frame containing the following columns:
Address, Type, Color, ExtendedType, Channel, Expected_Grn, Expected_Red,
Sample, and Intensity.
Each of the red_plot, green_plot, norm_plot and
independent_control_plot is an object of ggplot
class. They are plots of sample-dependent controls of red and green channel,
normalization probes and sample-independent controls, respectively.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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