get_gender: Get gender information to 'RGChannelSet'.
In markgene/yamat: Yet Another Methylation Array Toolkit
get_gender R Documentation
Get gender information to RGChannelSet.
Description
Get gender information to RGChannelSet.
Usage
get_gender(rgset, norm_method = "raw")
Arguments
rgset
An object of RGChannelSet-class.
norm_method
A character scalar of method passed to normalize,
including raw, illumina, swan, quantile, noob, funnorm, yamat, dkfz.
Default to "raw".
Details
We need to convert RGChannelSet object into GenomicMethylSet
object to getSex. We create the MethylSet
without normalization using preprocessRaw.
Value
A DataFrame returned by pData with
additional columns predictedSex (a character with values M and F),
xMed and yMed, which are the chip-wide medians of
measurements on the two sex chromosomes.
markgene/yamat documentation built on Aug. 26, 2024, 11:56 p.m.
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| get_gender | R Documentation |
Get gender information to RGChannelSet.
Description
Get gender information to RGChannelSet.
Usage
get_gender(rgset, norm_method = "raw")
Arguments
rgset |
An object of |
norm_method |
A character scalar of method passed to |
Details
We need to convert RGChannelSet object into GenomicMethylSet
object to getSex. We create the MethylSet
without normalization using preprocessRaw.
Value
A DataFrame returned by pData with
additional columns predictedSex (a character with values M and F),
xMed and yMed, which are the chip-wide medians of
measurements on the two sex chromosomes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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