remove_batch_effect_beta: Remove batch effect: beta value.
In markgene/yamat: Yet Another Methylation Array Toolkit
remove_batch_effect_beta R Documentation
Remove batch effect: beta value.
Description
Remove batch effect for beta value.
Usage
remove_batch_effect_beta(x, batch = NULL, batch2 = NULL, offset = 100, ...)
Arguments
x
An object of RatioSet-class or
GenomicRatioSet-class.
batch
factor or vector indicating batches.
batch2
optional factor or vector indicating a second series of
batches.
...
Other arguments can be passed to removeBatchEffect.
Details
Batch effect is removed by calling removeBatchEffect.
This is only useful when methylation and unmethylation signals are not
available, such as in objects of GenomicRatioSet-class.
Value
An object of argument x class.
markgene/yamat documentation built on Aug. 26, 2024, 11:56 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| remove_batch_effect_beta | R Documentation |
Remove batch effect: beta value.
Description
Remove batch effect for beta value.
Usage
remove_batch_effect_beta(x, batch = NULL, batch2 = NULL, offset = 100, ...)
Arguments
x |
An object of |
batch |
factor or vector indicating batches. |
batch2 |
optional factor or vector indicating a second series of batches. |
... |
Other arguments can be passed to |
Details
Batch effect is removed by calling removeBatchEffect.
This is only useful when methylation and unmethylation signals are not
available, such as in objects of GenomicRatioSet-class.
Value
An object of argument x class.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.