qc_control_probes: Quality control

View source: R/qc.R

qc_control_probesR Documentation

Quality control

Description

Quality control are performed in terms of observed intensities of control probes with expected value, detection p-values, and gender.

Usage

qc_control_probes(
  rgset,
  report_dir,
  plot_file = "control_probes.png",
  height = 10,
  width = 12,
  overwrite = FALSE,
  verbose = TRUE,
  ...
)

Arguments

rgset

An object of RGChannelSet-class.

report_dir

A character scalar of reporting directory.

plot_file

A character scalar of the filename of control probe plot. Default to "control_probes.png".

height

A numeric scalar of control probe plot height. Default to 10.

width

A numeric scalar of control probe plot width. Default to 12.

overwrite

A logical scalar. Default to FALSE.

verbose

A logical scalar. Default to TRUE.

...

Any arguments can be passed to ggsave.

Value

A list of the return of plot_control_probes function (invisible).


markgene/yamat documentation built on Aug. 26, 2024, 11:56 p.m.