explore_batch_effect_meth_rle: Explore batch effect meth - RLE.

In markgene/yamatClassifier: Yet Another Methylation Array Toolkit: Classifier

Explore batch effect meth - RLE.

Description

Explore batch effect meth - RLE.

Usage

explore_batch_effect_meth_rle(
  trainer,
  batch_name = "Batch",
  top_n = 20000,
  n_samples = 100
)

Arguments

trainer	A S3 object of YamatClassifierTrainer class.
batch_name	column name of batch in the targets attribute of YamatClassifierTrainer object.
top_n	an integer of the most variable N loci for relative log expression (RLE) analysis.
n_samples	if there are many samples, down-sample it to a number while keep the proportion of each group.

Value

a ggplot object.

markgene/yamatClassifier documentation built on Oct. 14, 2024, 2:36 a.m.