get_probes_from_scratch: Get probes of interest

In markgene/yamatClassifier: Yet Another Methylation Array Toolkit: Classifier

Get probes of interest

Description

The probe set has:

• Drop SNP.

• Drop loci on chr X or Y..

• Common between the array types of trainer and EPIC v2

Usage

get_probes_from_scratch(
  trainer,
  chip_type_name = NULL,
  present_by_epic_v2 = TRUE
)

Arguments

trainer	A S3 object of YamatClassifierTrainer class.
chip_type_name	column contains the chip type name.
present_by_epic_v2	bool if only include probes present in EPIC v2.

Value

a list of probe CG IDs.

markgene/yamatClassifier documentation built on Oct. 14, 2024, 2:36 a.m.