plot_relative_log_expression: Plot relative log expression.

In markgene/yamatClassifier: Yet Another Methylation Array Toolkit: Classifier

Plot relative log expression.

Description

Plot relative log expression.

Usage

plot_relative_log_expression(
  x,
  pheno,
  batch_name,
  batch_label,
  plot_title,
  plot_subtitle,
  seed = 123,
  n_samples = 100
)

Arguments

x	A matrix of RLE (RLE).
batch_name	column name of batch in the targets attribute of YamatClassifierTrainer object.
batch_label	batch label in the ggplot (color).
plot_title	plot title.
plot_subtitle	plot subtitle
seed	seed for sampling.
n_samples	if there are many samples, down-sample it to a number while keep the proportion of each group.
top_n	an integer of the most variable N loci for relative log expression (RLE) analysis.

Value

a ggplot object.

markgene/yamatClassifier documentation built on Oct. 14, 2024, 2:36 a.m.