plot_pca_result: Plot PCA.
In markgene/yamatClassifier: Yet Another Methylation Array Toolkit: Classifier

plot_pca_result

R Documentation

Plot PCA.

Description

Plot PCA.

Usage

plot_pca_result(
  pca_result,
  pheno,
  batch_name,
  classification_name,
  pc_x = 1,
  pc_y = 2,
  batch_label = "Batch",
  classification_label = "Classification",
  density_lwd = 0.6,
  plot_title = "PCA",
  plot_subtitle = "PCA subtitle"
)

Arguments

`pca_result`	An object of pca_result class.
`pheno`	the `data.frame` of phenotype.
`batch_name`	the column name of batch in the phenotype `data.frame`.
`classification_name`	the column name of classification in the phenotype `data.frame`.
`pc_x`	an integer of PC on x axis. Default to 1.
`pc_y`	an integer of PC on y axis. Default to 2.
`batch_label`	a character describe the ggplot2 label for batch. Default to "Batch".
`classification_label`	a character describe the ggplot2 label for classification. Default to "Classification".