get_dyad_pos: get_dyad_pos

In markheron/nucular: utility functions used for the analysis of genomic nucleosome data

Description

Extracts the dyad positions in the chosen way from a table with mapped fragment start and ends

Usage

get_dyad_pos(data_list, dyad_base = "center", offset = 73)

Arguments

data_list	list of mapped fragments for each chromosome
dyad_base	one of "center" (default), "start". "end" and "dinucleosome"; Based on which feature should the dyad position be calculated ("dinucleosome" == "start"+"end")
offset	(integer) offset if the dyad position isn't calculated from the center (-offset is used if dyad_base=="end")

Value

list of ff matricies with dyad positions and intensities

markheron/nucular documentation built on Feb. 18, 2020, 12:32 a.m.