mask_repeats: mask_repeats
In markheron/nucular: utility functions used for the analysis of genomic nucleosome data
Description
Usage
Arguments
Value
Description
Masks repeat regions read from repeatMasker output files.
Usage
1
2
mask_repeats(occ_single, mask_file_folder, repeats_to_mask,
nuc_half_width = 73)
Arguments
occ_single
(list of ff vectors) each ff representing one chromosome
mask_file_folder
(character) name of the folder where the repeatMasker files for each chromosome can be found
repeats_to_mask
(character vector) of types of repeats to mask
nuc_half_width
(integer) amount to additionally mask to the left and right of the repeat
Value
the masked occupancy ff vector list (cloned so the original is not changed)
markheron/nucular documentation built on Feb. 18, 2020, 12:32 a.m.
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Description Usage Arguments Value
Description
Masks repeat regions read from repeatMasker output files.
Usage
1 2 | mask_repeats(occ_single, mask_file_folder, repeats_to_mask,
nuc_half_width = 73)
|
Arguments
occ_single |
(list of ff vectors) each ff representing one chromosome |
mask_file_folder |
(character) name of the folder where the repeatMasker files for each chromosome can be found |
repeats_to_mask |
(character vector) of types of repeats to mask |
nuc_half_width |
(integer) amount to additionally mask to the left and right of the repeat |
Value
the masked occupancy ff vector list (cloned so the original is not changed)
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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