Files in markvdwiel/ShrinkBayes
Bayesian analysis of high-dimensional omics data, either Gaussian or counts
.Rbuildignore
.Rhistory
.gitattributes
.gitignore
DESCRIPTION
NAMESPACE
R/AllComp.R
R/BFDR.R
R/BFUpdatePosterior.R
R/BaselineDef.R
R/CombinePosteriors.R
R/CreateBlocks.R
R/FastScreenP.R
R/FitAllShrink.R
R/FitInlaAll.R
R/MixtureUpdatePosterior.R
R/MixtureUpdatePrior.R
R/NonParaUpdatePosterior.R
R/NonParaUpdatePrior.R
R/ReDefMiss.R
R/ScreenData.R
R/ShrinkGauss.R
R/ShrinkSeq.R
R/SpikeSlabPrior.R
R/SpikeSlabUpdatePosterior.R
R/SummaryTable.R
R/SummaryWrap.R
R/auc.R
R/dics.R
R/fact2vec.R
R/fdrcomp.R
R/fitinlacombine.R
R/gammaML.R
R/gaussML.R
R/gaussMLwithmean.R
R/is.wholenumber.R
R/lfdr.R
R/linear.spline.R
R/loggammaML.R
R/mean2log.R
R/meanlog.R
R/meannl.R
R/menuVignette.R
R/mixture2.R
R/mixture2loggammaML.R
R/mliks.R
R/myinla.dmarginal.R
R/myinla.expectation.R
R/myinla.expectation_emp.R
R/myinla.pmarginal.R
R/myinla.qmarginal.R
R/myinla.rmarginal.R
R/myinla.smarginal.R
R/mysfExport.R
R/plotPoster.R
R/postmean.R
R/randreplace.R
R/replacerand0.R
R/roc.R
R/samplepost.R
R/screendatahelp.R
R/shrinkbayes.R
README.md
data/CAGEdata10000.rda
data/HTRNAi.rda
data/datsim.rda
data/design_brain.rda
data/designmirseq.rda
data/mirseqnorm.rda
inst/doc/ShrinkBayes.R
inst/doc/ShrinkBayes.Rnw
inst/doc/ShrinkBayes.pdf
inst/doc/index.html
man/AllComp.Rd
man/BFDR.Rd
man/BFUpdatePosterior.Rd
man/BaselineDef.Rd
man/CAGEdata10000.Rd
man/CombinePosteriors.Rd
man/CreateBlocks.Rd
man/FastScreenP.Rd
man/FitAllShrink.Rd
man/FitInlaAll.Rd
man/HTRNAi.Rd
man/MixtureUpdatePosterior.Rd
man/MixtureUpdatePrior.Rd
man/NonParaUpdatePosterior.Rd
man/NonParaUpdatePrior.Rd
man/ReDefMiss.Rd
man/ScreenData.Rd
man/ShrinkBayes-package.Rd
man/ShrinkBayesWrap.Rd
man/ShrinkGauss.Rd
man/ShrinkSeq.Rd
man/ShrinkSeq.Rd.bak
man/SpikeSlabPosterior.Rd
man/SpikeSlabPrior.Rd
man/SummaryTable.Rd
man/SummaryWrap.Rd
man/datsim.Rd
man/design_brain.Rd
man/designmirseq.Rd
man/mirseqnorm.Rd
man/plotPoster.Rd
