save_results: Save results to folder

In martahidalgo/hipathia: HiPathia: High-throughput Pathway Analysis

Save results to folder

Description

Saves results to a folder. In particular, it saves the matrix of subpathway values, a table with the results of the provided comparison, the accuracy of the results and the .SIF and attributes of the pathways.

Usage

save_results(results, comp, metaginfo, output_folder = NULL, path = NULL)

Arguments

results	Results object as returned by the hipathia function.
comp	Comparison as returned by the do_wilcoxon function.
metaginfo	Pathways object
output_folder	Name of the folder in which the results will be stored.
path	Absolute path to the parent directory in which 'output_folder' will be saved. If it is not provided, it will be created in a temp folder.

Value

Creates a folder in disk in which all the information to browse the pathway results is stored.

Examples

data(results)
data(comp)
pathways <- load_pathways(species = "hsa", pathways_list = c("hsa03320",
"hsa04012"))
save_results(results, comp, pathways, "output_results")

martahidalgo/hipathia documentation built on Jan. 12, 2023, 1:44 p.m.