Files in martingarridorc/biokit

Toolkit for the automatic analysis of omics data

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DESCRIPTION

LICENSE

NAMESPACE

R/add_status.R R/create_contrasts.R R/create_design.R R/data.R R/data_visualization.R R/edger_pairwise_comparison.R R/functional_analysis.R R/generic_pairwise_comparison.R R/limma_pairwise_comparison.R R/misc_utils.R R/over_representation_analysis.R R/tmm_normalization.R R/translate_matrix.R R/validators.R README.Rmd README.md

_pkgdown.yml

biokit.Rproj

data/humanHallmarks.rda

data/sarsCovData.rda

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docs/reference/autoBiokitAnalysis.html

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man/addStatusByCutoff.Rd man/addStatusByRank.Rd man/autoEdgerComparison.Rd man/autoLimmaComparison.Rd man/autoPairwiseMatrixTest.Rd man/contrastsFromDesign.Rd man/countsToTmm.Rd man/createPairwiseContrasts.Rd man/defaultLogFc.Rd man/designFromSampInfo.Rd man/edgerDfFromContrasts.Rd

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man/fisherExactTest.Rd man/gseaFromStats.Rd man/gseaPlot.Rd man/heatmapPlot.Rd man/humanHallmarks.Rd man/limmaDfFromContrasts.Rd man/messageMappingInfo.Rd man/nsTestPValue.Rd man/nsTestT.Rd man/oraFromStats.Rd man/overRepresentationAnalysis.Rd man/pairwiseMatrixTest.Rd man/pcaPlot.Rd man/sarsCovMat.Rd man/sarsCovSampInfo.Rd man/splitFunMerge.Rd man/translateMatrix.Rd man/translateMatrixWithDb.Rd man/validateMatrix.Rd man/validateSampInfo.Rd man/validateTranslatorDf.Rd man/violinPlot.Rd man/volcanoPlot.Rd

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tests/testthat.R tests/testthat/test_integrated_analysis.R tests/testthat/test_tmm_normalization.R tests/testthat/test_translate_matrix.R tests/testthat/test_validators.R

martingarridorc/biokit documentation built on June 28, 2021, 12:24 a.m.