autoPairwiseMatrixTest: Automatic pairwise contrast

In martingarridorc/biokit: Toolkit for the automatic analysis of omics data

Description

Perform the automatic pairwise comparison of matrix data using a sample information data frame column.

Usage

autoPairwiseMatrixTest(
  mat,
  sampInfo,
  groupCol,
  sep = "-",
  compName = "comparison",
  ...
)

Arguments

mat	Matrix containing data to be analyzed.
sampInfo	Sample information data frame.
groupCol	Name of the sampInfo column containing the grouping variable.
sep	Separator while creating contrasts.
compName	Name of the output column that identifies the comparison.
...	Other arguments for pairwiseMatrixTest.

Value

A data frame containing the results for all the comparisons

martingarridorc/biokit documentation built on June 28, 2021, 12:24 a.m.