addStatusByRank: Add status by rank

In martingarridorc/biokit: Toolkit for the automatic analysis of omics data

Description

Order the input data frame using a specific column and annotates the top N features.

Usage

addStatusByRank(
  resDf,
  rankCol,
  topN,
  splitUpDown,
  decreasing = TRUE,
  absolute = TRUE,
  splitCol = "logFc",
  splitMidPoint = 0,
  noChangeLabel = "No change",
  statusCol = "status",
  upLabel = "Up",
  downLabel = "Down",
  sigLabel = "Significant"
)

Arguments

resDf	The data frame to annotate.
rankCol	The column used to order the data frame.
topN	The top N features to be annotated.
splitUpDown	Split annotation into up and down features? If TRUE, splitCol and splitMidPoint should be provided.
decreasing	Order rankCol decreasing?
absolute	Use absolute rankCol values?
splitCol	If splitUpDown = TRUE, the column used to split features into up and down.
splitMidPoint	If splitUpDown = TRUE, the splitCol value considered as midpoint.
noChangeLabel	Label to be used in not annotated rows.
statusCol	Name of the status column.
upLabel	Label for up-regulated features.
downLabel	Label for down-regulated features.
sigLabel	Label for significant features. Only used if splitUpDown = FALSE.

Value

The annotated data frame.

martingarridorc/biokit documentation built on June 28, 2021, 12:24 a.m.