heatmapPlot: Heatmap plot

In martingarridorc/biokit: Toolkit for the automatic analysis of omics data

Description

Creates a heatmap representation of the more variable features in a matrix

Usage

heatmapPlot(mat, sampInfo, groupCol, scaleBy = "row", nTop = 100, ...)

Arguments

mat	The matrix to be plotted
sampInfo	The sample information data frame
groupCol	The column name of the grouping variable
scaleBy	character indicating if the values should be centered and scaled in either the row direction or the column direction, or none. Corresponding values are "row", "column" and "none"
nTop	Number of features to be plotted after ranking them by the standard deviation
...	Arguments to be passed to pheatmap

Value

The phetamap plot

martingarridorc/biokit documentation built on June 28, 2021, 12:24 a.m.