translateMatrixWithDb: Translate matrix rownames using annotation package
In martingarridorc/biokit: Toolkit for the automatic analysis of omics data
Description
Usage
Arguments
Value
View source: R/translate_matrix.R
Description
Uses an annotation package like
org.Hs.eg.db or
org.Mm.eg.db
to translate the rownames of the input matrix using translateMatrix.
Usage
1
translateMatrixWithDb(mat, db, sourceKey, targetKey, summariseFun)
Arguments
mat
Input matrix.
db
Annotation package object to use for the translation.
sourceKey
Source key in the DB.
targetKey
Target key in the DB.
summariseFun
Function used to resolve multi-mapping situations.
Value
A matrix with translated and summarised ids.
martingarridorc/biokit documentation built on June 28, 2021, 12:24 a.m.
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Description Usage Arguments Value
View source: R/translate_matrix.R
Description
Uses an annotation package like org.Hs.eg.db or org.Mm.eg.db to translate the rownames of the input matrix using translateMatrix.
Usage
1 | translateMatrixWithDb(mat, db, sourceKey, targetKey, summariseFun)
|
Arguments
mat |
Input matrix. |
db |
Annotation package object to use for the translation. |
sourceKey |
Source key in the DB. |
targetKey |
Target key in the DB. |
summariseFun |
Function used to resolve multi-mapping situations. |
Value
A matrix with translated and summarised ids.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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