Man pages for matdoering/openPrimeR
Multiplex PCR Primer Design and Analysis
| AnalysisStats | Primer Analysis Statistics. |
| check_cvg_constraints | Evaluation of Coverage Constraints. |
| create_report-list-list-method | Creation of a PDF Report for Primer Comparison. |
| create_report-Primers-Templates-method | Creation of a PDF report. |
| Data | Data Sets. |
| filterLimits-methods | Getter for Filtering Constraint Limits. |
| filters-methods | Getter for Filtering Constraints. |
| get_cvg_stats-list-method | Coverage Statistics for Multiple Primer Sets. |
| get_cvg_stats-Primers-method | Coverage Statistics of a Primer Set. |
| Input | Input Functionalities. |
| openPrimeR-package | Multiplex PCR Primer Design and Analysis. |
| Output | Output Functionalities. |
| plot_constraint_deviation-list-method | Plot of Constraint Deviations for Multiple Primer Sets. |
| plot_constraint_deviation-Primers-method | Plot of Constraint Deviations for a Single Primer Set. |
| plot_constraint_fulfillment-list-method | Comparison of Evaluation Results. |
| plot_constraint_fulfillment-Primers-method | Overview of Constraint Fulfillment. |
| plot_constraint-list-method | Boxplot for Comparing Constraints. |
| plot_constraint-Primers-method | Histogram of Constraint Values. |
| plot_cvg_constraints-list-method | Plot for Comparing Primer Coverage Constraints. |
| plot_cvg_constraints-Primers-method | Histogram of Coverage Constraints. |
| plot_primer_binding_regions-list-list-method | Plot of Primer Binding Regions for Multiple Sets. |
| plot_primer_binding_regions-Primers-Templates-method | Plot of Primer Binding Regions for a Single Primer Set. |
| plot_primer_cvg-list-list-method | Plot Multiple Primer Coverages. |
| plot_primer_cvg-Primers-Templates-method | Plot Individual Primer Coverage. |
| Plots | Plotting Functions. |
| plot_template_cvg-list-list-method | Templates Coverage for Multiple Primer Sets. |
| plot_template_cvg-Primers-Templates-method | Bar Plot of Template Coverage. |
| PrimerDesign | Primer Design Functionalities. |
| PrimerEval | Primer Evaluation. |
| Primers-method | S4 cbind for Primers. |
| runTutorial | The openPrimeR Tutorial. |
| Scoring | Scoring Functions. |
| Settings | Settings Functionalities. |
| TemplatesFunctions | Template Functionalities. |
| Templates-method | S4 cbind for Templates. |
